Legacy v2 users

TI-Toolbox v2 is deprecated. It used a PyQt desktop interface; the current guides describe the v3 Electron application and job server. Do not use current setup or extension instructions as instructions for a v2 installation.

If you still use v2, consult the documentation saved with v2.5.0 or the source at your installed version’s tag. For the transition to v3, see the v3 version notes.

Historical Gmsh and Freeview views

The following captures document v2’s external viewers. They are retained for identification of older workflows and results, not as instructions for v3, which uses the native TetraVox application.

v2 atlas mesh visualization Atlas meshes in the legacy external-viewer workflow.
v2 ROI volume visualization An anatomical ROI overlay in the legacy workflow.
v2 atlas and field visualization An electric-field overlay with an atlas in the legacy workflow.
v2 ROI and field visualization An electric-field overlay restricted to a region of interest.

Gmsh

Launching Gmsh from TI-Toolbox v2 v2 launching Gmsh to display a head mesh with electric-field data.
Gmsh tools menu The Gmsh tools menu used for clipping and element visibility.
Gmsh display options The legacy Gmsh options for colour scales, ranges and general display settings.

Freeview

Freeview overlay menu Freeview overlay controls and atlas options from the v2 workflow.
Freeview electric-field overlay Freeview displaying an electric-field overlay on anatomical MRI.