Wiki
Welcome to the Temporal Interference Toolbox Wiki. Here you’ll find detailed guides and documentation for all aspects of the toolbox. Check out our Video Tutorials for step-by-step visual guides.
Core Functionality
- Pre-Processing - Structural MRI preparation and mesh generation workflows
- Diffusion Processing - QSIPrep/QSIRecon integration for DTI-based anisotropic simulations
- Flex Search - TI optimization pipeline based on differential evolutionary algorithm
- Ex Search - TI optimization pipeline based on leadfield matrices
- Simulator - Simulator with flexible parameter input and anisotropic support
- Analyzer - Comprehensive field analysis for both mesh and voxel data
- Visualizers - Gmsh and Freeview integration for mesh and NIfTI visualization
- GUI - Main graphical interface of TI-Toolbox
- CLI - Interactive and direct command line interface with TI-Toolbox
Embedded Tools
- Reports - Understanding HTML simulation reports and results
- Logging - Comprehensive logging system documentation
- Atlas Resampling - Working with brain atlases and resampling
- Montage Visualizer - Electrode montage visualization on head
- Electrode Mapping - Optimal electrode position mapping to EEG nets
Extensions
- Extension System - Modular plugin architecture and development guide
- Blender Integration - Modular plugin architecture and development guide
- Free Electrode Placement - Interactive 3D electrode positioning on head surfaces
- Nilearn Visuals - Publication-ready brain visualizations
- Cluster-Based Permutation Testing - Non-parametric statistical analysis
- Quick Notes - Timestamped note-taking during analysis sessions
- NIfTI Group Averaging - Group analysis and comparison tools
- Tissue Analyzer - Volume and thickness assessment for CSF, bone, and skin
Development & Testing
- Testing Pipeline - Comprehensive CI/CD testing pipeline with CircleCI integration
- Python Environment - Managing the SimNIBS Python environment and dependencies
- Desktop App - Electron-based launcher architecture and workflow
- API Reference - Complete Python API documentation (auto-generated from docstrings)
Support
For additional help, installation instructions, and development resources, check the links in the sidebar or visit our GitHub repository.