Wiki

Welcome to the Temporal Interference Toolbox Wiki. Here you’ll find detailed guides and documentation for all aspects of the toolbox.

Core Functionality

• Pre-Processing - Data preparation and mesh generation workflows
• MOVEA Optimization - Multi-objective evolutionary algorithm for TI electrode optimization
• Flex Search - TI optimization pipeline based on differntial evolutionary algorithm
• Ex Search - TI optimization pipeline based on leadfield matrices
• Simulator - Simualtor with flexible parameter input
• Analyzer - Comprehensive field analysis for both mesh and voxel data

Embedded Tools

• Reports - Understanding HTML simulation reports and results
• Logging - Comprehensive logging system documentation
• Atlas Resampling - Working with brain atlases and resampling
• Montage Visualizer - Electrode montage visualization on head
• Electrode Mapping - Optimal electrode position mapping to EEG nets

Extensions

• Extension System - Modular plugin architecture and development guide
• Electrode Placement - Interactive 3D electrode positioning on head surfaces
• Nilearn Visuals - Publication-ready brain visualizations
• Cluster-Based Permutation Testing - Non-parametric statistical analysis
• Quick Notes - Timestamped note-taking during analysis sessions
• NIfTI Group Averaging - Group analysis and comparison tools
• Tissue Analyzer - Volume and thickness assessment for CSF, bone, and skin

Development & Testing

• Testing Pipeline - Comprehensive CI/CD testing pipeline with CircleCI integration
• Python Environment - Managing the SimNIBS Python environment and dependencies
• Desktop App - Electron-based launcher architecture and workflow

Support

For additional help, installation instructions, and development resources, check the links in the sidebar or visit our GitHub repository.