tools

tit.tools

Standalone utilities for mesh, field, and electrode manipulation.

This package collects lightweight helper scripts that are typically invoked from the command line or called by higher-level pipeline stages. Heavy dependencies (SimNIBS, nibabel, scipy) are imported lazily inside each module so that import tit.tools remains fast.

Modules

check_for_update Query the GitHub API for new TI-Toolbox releases. extract_labels Extract specific label values from a NIfTI segmentation. field_extract Crop grey- and white-matter meshes from a SimNIBS head mesh. gmsh_opt Generate Gmsh .opt visualization option files. map_electrodes Map optimised electrode positions to the nearest EEG net electrodes. mesh2nii Convert SimNIBS meshes to subject- and MNI-space NIfTI volumes. montage_visualizer Render PNG images of electrode montages on an EEG cap template. nifti_to_mesh Convert a NIfTI segmentation/mask to an STL or Gmsh surface mesh. read_annot Read and display FreeSurfer .annot annotation files.